PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00516g00651.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 357aa    MW: 39263.3 Da    PI: 7.0206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00516g00651.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.2e-07102126126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC+ f++ G C+y  +C+FaHg
  Peaxi162Scf00516g00651.1 102 FKTKLCCKFRA-GVCPYITNCNFAHG 126
                               69*********.*************8 PP

2zf-CCCH17.76.3e-06180203326
                               S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                + C+ f+    C+yGd+C+F H+
  Peaxi162Scf00516g00651.1 180 GRHCKKFYTEEGCPYGDTCTFLHD 203
                               5669*****9*************7 PP

3zf-CCCH42.97.9e-14236261126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C+ +  tG+C++G++C+FaHg
  Peaxi162Scf00516g00651.1 236 WKTRICNKWETTGYCPFGSKCHFAHG 261
                               8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-1499134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-899132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.418101128IPR000571Zinc finger, CCCH-type
SMARTSM003560.014101127IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-5102126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-9176205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-7177205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347177205IPR000571Zinc finger, CCCH-type
SMARTSM003560.38177204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-17231265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-10233266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422235263IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8235262IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11236261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDFMGEASFG GGSVIPDTYS NGSGFDNWGP GYSDQEVWAT EDDYRAWNTG PSSETPSNSN  60
QDGRHSQTRS GSEPPNKKSR NSQGADSQFT NYRSKAIGKM FFKTKLCCKF RAGVCPYITN  120
CNFAHGIEEL RKPPPNWQEI VAAHESERGG GVTLEPREEH QIPTVSSPEL RAEPQRSFKG  180
RHCKKFYTEE GCPYGDTCTF LHDEQSRARE SVAISVTPTV GGFNNATGAS PKPSNWKTRI  240
CNKWETTGYC PFGSKCHFAH GAAELHKYGG GLVEFEGNDS LSTSPDLKQG GGSFKTIEST  300
VPSTISGPYT DFYHLAPGVQ VQRASGIAQR PGQRVIQKWK GPDKISKIYG DWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764664.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LQM31e-126C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLM1CID50.0M1CID5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000680590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-127C3H family protein